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@@ -260,6 +260,7 @@ class Application(object):
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def run_command(self, cmd):
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try:
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+ self.log.info("Executing `{}`".format(cmd))
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p = subprocess.Popen(shlex.split(cmd), stdout=subprocess.PIPE, stderr=subprocess.PIPE)
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for line in iter(p.stdout.readline, ''):
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@@ -371,8 +372,8 @@ class Application(object):
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' --overall-angle -360'
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' --pixel-size {pixel_size}e-6'
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' --roll-angle 0'
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- ' --slices-per-device 600'
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- ' --output {prefix}/Slices'
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+ ' --slices-per-device 300'
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+ ' --output {prefix}/slices/slice'
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.format(pixel_size=info['PixelSize'],
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x_region=x_region, y_region=y_region,
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lamino_angle=lamino_angle,
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