/*
* Copyright (C) 2011-2014 Karlsruhe Institute of Technology
*
* This file is part of Ufo.
*
* This library is free software: you can redistribute it and/or
* modify it under the terms of the GNU Lesser General Public
* License as published by the Free Software Foundation, either
* version 3 of the License, or (at your option) any later version.
*
* This library is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with this library. If not, see .
*/
#include
#include
#ifdef __APPLE__
#include
#else
#include
#endif
#include "ufo-anka-backproject-task.h"
#define EXTRACT_INT(region, index) g_value_get_int (g_value_array_get_nth ((region), (index)))
#define EXTRACT_FLOAT(region, index) g_value_get_float (g_value_array_get_nth ((region), (index)))
#define REGION_SIZE(region) ((EXTRACT_INT ((region), 2)) == 0) ? 0 : \
((EXTRACT_INT ((region), 1) - EXTRACT_INT ((region), 0) - 1) /\
EXTRACT_INT ((region), 2) + 1)
/**
* SECTION:ufo-anka-backproject-task
* @Short_description: Backproject projection by projection
* @Title: anka_backproject
*
*/
struct _UfoAnkaBackprojectTaskPrivate {
/* private */
gboolean generated;
guint count;
float tmatrix[8];
/* OpenCL */
cl_context context;
cl_kernel bp_kernel;
cl_sampler sampler;
/* properties */
GValueArray *x_region;
GValueArray *y_region;
GValueArray *z_region;
GValueArray *center;
GValueArray *projection_offset;
gboolean tomo_angle_is_absolute;
gfloat tomo_angle;
gfloat lamino_angle;
};
static void ufo_task_interface_init (UfoTaskIface *iface);
G_DEFINE_TYPE_WITH_CODE (UfoAnkaBackprojectTask, ufo_anka_backproject_task, UFO_TYPE_TASK_NODE,
G_IMPLEMENT_INTERFACE (UFO_TYPE_TASK,
ufo_task_interface_init))
#define UFO_ANKA_BACKPROJECT_TASK_GET_PRIVATE(obj) (G_TYPE_INSTANCE_GET_PRIVATE((obj), UFO_TYPE_ANKA_BACKPROJECT_TASK, UfoAnkaBackprojectTaskPrivate))
enum {
PROP_0,
PROP_X_REGION,
PROP_Y_REGION,
PROP_Z_REGION,
PROP_PROJECTION_OFFSET,
PROP_CENTER,
PROP_TOMO_ANGLE_IS_ABSOLUTE,
PROP_TOMO_ANGLE,
PROP_LAMINO_ANGLE,
N_PROPERTIES
};
static GParamSpec *properties[N_PROPERTIES] = { NULL, };
static void
create_transformation_matrix (UfoAnkaBackprojectTaskPrivate *priv, float tomo_angle)
{
priv->tmatrix[0] = cos (tomo_angle);
priv->tmatrix[1] = sin (tomo_angle);
priv->tmatrix[2] = 0.0f;
priv->tmatrix[3] = EXTRACT_FLOAT (priv->center, 0);
priv->tmatrix[4] = cos (priv->lamino_angle) * sin (tomo_angle);
priv->tmatrix[5] = -cos (priv->lamino_angle) * cos(tomo_angle);
priv->tmatrix[6] = sin(priv->lamino_angle);
priv->tmatrix[7] = EXTRACT_FLOAT (priv->center, 1);
}
UfoNode *
ufo_anka_backproject_task_new (void)
{
return UFO_NODE (g_object_new (UFO_TYPE_ANKA_BACKPROJECT_TASK, NULL));
}
static void
ufo_anka_backproject_task_setup (UfoTask *task,
UfoResources *resources,
GError **error)
{
UfoAnkaBackprojectTaskPrivate *priv;
cl_int cl_error;
priv = UFO_ANKA_BACKPROJECT_TASK_GET_PRIVATE (task);
priv->context = ufo_resources_get_context (resources);
priv->bp_kernel = ufo_resources_get_kernel (resources, "ankabackproject.cl", "backproject", error);
priv->sampler = clCreateSampler (priv->context,
(cl_bool) FALSE,
CL_ADDRESS_CLAMP,
CL_FILTER_LINEAR,
&cl_error);
UFO_RESOURCES_CHECK_CLERR (clRetainContext (priv->context));
UFO_RESOURCES_CHECK_CLERR (cl_error);
if (priv->bp_kernel) {
UFO_RESOURCES_CHECK_CLERR (clRetainKernel (priv->bp_kernel));
}
}
static void
ufo_anka_backproject_task_get_requisition (UfoTask *task,
UfoBuffer **inputs,
UfoRequisition *requisition)
{
UfoAnkaBackprojectTaskPrivate *priv;
priv = UFO_ANKA_BACKPROJECT_TASK_GET_PRIVATE (task);
requisition->n_dims = 3;
requisition->dims[0] = REGION_SIZE (priv->x_region);
requisition->dims[1] = REGION_SIZE (priv->y_region);
requisition->dims[2] = REGION_SIZE (priv->z_region);
}
static guint
ufo_anka_backproject_task_get_num_inputs (UfoTask *task)
{
return 1;
}
static guint
ufo_anka_backproject_task_get_num_dimensions (UfoTask *task,
guint input)
{
g_return_val_if_fail (input == 0, 0);
return 3;
}
static gboolean
ufo_anka_backproject_task_equal_real (UfoNode *n1,
UfoNode *n2)
{
g_return_val_if_fail (UFO_IS_ANKA_BACKPROJECT_TASK (n1) && UFO_IS_ANKA_BACKPROJECT_TASK (n2), FALSE);
return UFO_ANKA_BACKPROJECT_TASK (n1)->priv->bp_kernel == UFO_ANKA_BACKPROJECT_TASK (n2)->priv->bp_kernel;
}
static UfoTaskMode
ufo_anka_backproject_task_get_mode (UfoTask *task)
{
return UFO_TASK_MODE_REDUCTOR | UFO_TASK_MODE_GPU;
}
static gboolean
ufo_anka_backproject_task_process (UfoTask *task,
UfoBuffer **inputs,
UfoBuffer *output,
UfoRequisition *requisition)
{
UfoAnkaBackprojectTaskPrivate *priv;
UfoGpuNode *node;
UfoProfiler *profiler;
gfloat tomo_angle;
/* regions stripped off the "to" value */
gint x_region[2], y_region[2], z_region[2], proj_offset[2];
cl_command_queue cmd_queue;
cl_mem image;
cl_mem out_mem;
priv = UFO_ANKA_BACKPROJECT_TASK (task)->priv;
node = UFO_GPU_NODE (ufo_task_node_get_proc_node (UFO_TASK_NODE (task)));
cmd_queue = ufo_gpu_node_get_cmd_queue (node);
out_mem = ufo_buffer_get_device_array (output, cmd_queue);
image = ufo_buffer_get_device_image (inputs[0], cmd_queue);
x_region[0] = EXTRACT_INT (priv->x_region, 0);
x_region[1] = EXTRACT_INT (priv->x_region, 2);
y_region[0] = EXTRACT_INT (priv->y_region, 0);
y_region[1] = EXTRACT_INT (priv->y_region, 2);
z_region[0] = EXTRACT_INT (priv->z_region, 0);
z_region[1] = EXTRACT_INT (priv->z_region, 2);
proj_offset[0] = EXTRACT_INT (priv->projection_offset, 0);
proj_offset[1] = EXTRACT_INT (priv->projection_offset, 1);
tomo_angle = priv->tomo_angle_is_absolute ? priv->tomo_angle : priv->tomo_angle * priv->count;
create_transformation_matrix (priv, tomo_angle);
UFO_RESOURCES_CHECK_CLERR (clSetKernelArg (priv->bp_kernel, 0, sizeof (cl_mem), &out_mem));
UFO_RESOURCES_CHECK_CLERR (clSetKernelArg (priv->bp_kernel, 1, sizeof (cl_mem), &image));
UFO_RESOURCES_CHECK_CLERR (clSetKernelArg (priv->bp_kernel, 2, sizeof (cl_sampler), &priv->sampler));
UFO_RESOURCES_CHECK_CLERR (clSetKernelArg (priv->bp_kernel, 3, sizeof (cl_int2), x_region));
UFO_RESOURCES_CHECK_CLERR (clSetKernelArg (priv->bp_kernel, 4, sizeof (cl_int2), y_region));
UFO_RESOURCES_CHECK_CLERR (clSetKernelArg (priv->bp_kernel, 5, sizeof (cl_int2), z_region));
UFO_RESOURCES_CHECK_CLERR (clSetKernelArg (priv->bp_kernel, 6, sizeof (cl_float8), priv->tmatrix));
UFO_RESOURCES_CHECK_CLERR (clSetKernelArg (priv->bp_kernel, 7, sizeof (cl_int2), proj_offset));
UFO_RESOURCES_CHECK_CLERR (clSetKernelArg (priv->bp_kernel, 8, sizeof (cl_uint), (cl_uint *) &priv->count));
profiler = ufo_task_node_get_profiler (UFO_TASK_NODE (task));
ufo_profiler_call (profiler, cmd_queue, priv->bp_kernel, 3, requisition->dims, NULL);
priv->count++;
return TRUE;
}
static gboolean
ufo_anka_backproject_task_generate (UfoTask *task,
UfoBuffer *output,
UfoRequisition *requisition)
{
UfoAnkaBackprojectTaskPrivate *priv;
priv = UFO_ANKA_BACKPROJECT_TASK_GET_PRIVATE (task);
if (priv->generated) {
return FALSE;
}
priv->generated = TRUE;
return TRUE;
}
static void
ufo_anka_backproject_task_finalize (GObject *object)
{
UfoAnkaBackprojectTaskPrivate *priv;
priv = UFO_ANKA_BACKPROJECT_TASK_GET_PRIVATE (object);
g_value_array_free (priv->x_region);
g_value_array_free (priv->y_region);
g_value_array_free (priv->z_region);
g_value_array_free (priv->projection_offset);
g_value_array_free (priv->center);
if (priv->bp_kernel) {
UFO_RESOURCES_CHECK_CLERR (clReleaseKernel (priv->bp_kernel));
priv->bp_kernel = NULL;
}
if (priv->context) {
UFO_RESOURCES_CHECK_CLERR (clReleaseContext (priv->context));
priv->context = NULL;
}
if (priv->sampler) {
UFO_RESOURCES_CHECK_CLERR (clReleaseSampler (priv->sampler));
priv->sampler = NULL;
}
G_OBJECT_CLASS (ufo_anka_backproject_task_parent_class)->finalize (object);
}
static void
ufo_task_interface_init (UfoTaskIface *iface)
{
iface->setup = ufo_anka_backproject_task_setup;
iface->get_requisition = ufo_anka_backproject_task_get_requisition;
iface->get_num_inputs = ufo_anka_backproject_task_get_num_inputs;
iface->get_num_dimensions = ufo_anka_backproject_task_get_num_dimensions;
iface->get_mode = ufo_anka_backproject_task_get_mode;
iface->process = ufo_anka_backproject_task_process;
iface->generate = ufo_anka_backproject_task_generate;
}
static void
ufo_anka_backproject_task_set_property (GObject *object,
guint property_id,
const GValue *value,
GParamSpec *pspec)
{
UfoAnkaBackprojectTaskPrivate *priv = UFO_ANKA_BACKPROJECT_TASK_GET_PRIVATE (object);
GValueArray *array;
switch (property_id) {
case PROP_X_REGION:
array = (GValueArray *) g_value_get_boxed (value);
g_value_array_free (priv->x_region);
priv->x_region = g_value_array_copy (array);
break;
case PROP_Y_REGION:
array = (GValueArray *) g_value_get_boxed (value);
g_value_array_free (priv->y_region);
priv->y_region = g_value_array_copy (array);
break;
case PROP_Z_REGION:
array = (GValueArray *) g_value_get_boxed (value);
g_value_array_free (priv->z_region);
priv->z_region = g_value_array_copy (array);
break;
case PROP_PROJECTION_OFFSET:
array = (GValueArray *) g_value_get_boxed (value);
g_value_array_free (priv->projection_offset);
priv->projection_offset = g_value_array_copy (array);
break;
case PROP_CENTER:
array = (GValueArray *) g_value_get_boxed (value);
g_value_array_free (priv->center);
priv->center = g_value_array_copy (array);
break;
case PROP_TOMO_ANGLE_IS_ABSOLUTE:
priv->tomo_angle_is_absolute = g_value_get_boolean (value);
break;
case PROP_TOMO_ANGLE:
priv->tomo_angle = g_value_get_float (value);
break;
case PROP_LAMINO_ANGLE:
priv->lamino_angle = g_value_get_float (value);
break;
default:
G_OBJECT_WARN_INVALID_PROPERTY_ID (object, property_id, pspec);
break;
}
}
static void
ufo_anka_backproject_task_get_property (GObject *object,
guint property_id,
GValue *value,
GParamSpec *pspec)
{
UfoAnkaBackprojectTaskPrivate *priv = UFO_ANKA_BACKPROJECT_TASK_GET_PRIVATE (object);
switch (property_id) {
case PROP_X_REGION:
g_value_set_boxed (value, priv->x_region);
break;
case PROP_Y_REGION:
g_value_set_boxed (value, priv->y_region);
break;
case PROP_Z_REGION:
g_value_set_boxed (value, priv->z_region);
break;
case PROP_PROJECTION_OFFSET:
g_value_set_boxed (value, priv->projection_offset);
break;
case PROP_CENTER:
g_value_set_boxed (value, priv->center);
break;
case PROP_TOMO_ANGLE_IS_ABSOLUTE:
g_value_set_boolean (value, priv->tomo_angle_is_absolute);
break;
case PROP_TOMO_ANGLE:
g_value_set_float (value, priv->tomo_angle);
break;
case PROP_LAMINO_ANGLE:
g_value_set_float (value, priv->lamino_angle);
break;
default:
G_OBJECT_WARN_INVALID_PROPERTY_ID (object, property_id, pspec);
break;
}
}
static void
ufo_anka_backproject_task_class_init (UfoAnkaBackprojectTaskClass *klass)
{
GObjectClass *oclass;
UfoNodeClass *node_class;
oclass = G_OBJECT_CLASS (klass);
node_class = UFO_NODE_CLASS (klass);
oclass->finalize = ufo_anka_backproject_task_finalize;
oclass->set_property = ufo_anka_backproject_task_set_property;
oclass->get_property = ufo_anka_backproject_task_get_property;
GParamSpec *region_vals = g_param_spec_int ("region_values",
"Region values",
"Elements in regions",
G_MININT,
G_MAXINT,
(gint) 0,
G_PARAM_READWRITE);
GParamSpec *float_region_vals = g_param_spec_float ("float_region_values",
"Float Region values",
"Elements in float regions",
-G_MAXFLOAT,
G_MAXFLOAT,
0.0f,
G_PARAM_READWRITE);
properties[PROP_X_REGION] =
g_param_spec_value_array ("x_region",
"X region for reconstruction as (from, to, step)",
"X region for reconstruction as (from, to, step)",
region_vals,
G_PARAM_READWRITE);
properties[PROP_Y_REGION] =
g_param_spec_value_array ("y_region",
"Y region for reconstruction as (from, to, step)",
"Y region for reconstruction as (from, to, step)",
region_vals,
G_PARAM_READWRITE);
properties[PROP_Z_REGION] =
g_param_spec_value_array ("z_region",
"Z region for reconstruction as (from, to, step)",
"Z region for reconstruction as (from, to, step)",
region_vals,
G_PARAM_READWRITE);
properties[PROP_PROJECTION_OFFSET] =
g_param_spec_value_array ("projection-offset",
"Offset to projection data as (x, y)",
"Offset to projection data as (x, y) for the case input data \
is cropped to the necessary range of interest",
region_vals,
G_PARAM_READWRITE);
properties[PROP_CENTER] =
g_param_spec_value_array ("center",
"Center of the volume with respect to projections (x, y)",
"Center of the volume with respect to projections (x, y), (rotation axes)",
float_region_vals,
G_PARAM_READWRITE);
properties[PROP_TOMO_ANGLE_IS_ABSOLUTE] =
g_param_spec_boolean ("tomo-angle-is-absolute",
"Tomographic angle is absolute",
"If TRUE, the value stored in tomo-angle property represents \
an absolute angle, relative otherwise",
FALSE,
G_PARAM_READWRITE);
properties[PROP_TOMO_ANGLE] =
g_param_spec_float ("tomo-angle",
"Tomographic rotation angle in radians",
"Tomographic rotation angle in radians (used for acquiring projections)",
-G_MAXFLOAT,
G_MAXFLOAT,
0.0f,
G_PARAM_READWRITE);
properties[PROP_LAMINO_ANGLE] =
g_param_spec_float ("lamino-angle",
"Absolute laminogrpahic angle in radians",
"Absolute laminogrpahic angle in radians determining the sample tilt",
0.0f,
(float) G_PI / 2,
0.0f,
G_PARAM_READWRITE);
for (guint i = PROP_0 + 1; i < N_PROPERTIES; i++)
g_object_class_install_property (oclass, i, properties[i]);
node_class->equal = ufo_anka_backproject_task_equal_real;
g_type_class_add_private (klass, sizeof(UfoAnkaBackprojectTaskPrivate));
}
static void
ufo_anka_backproject_task_init(UfoAnkaBackprojectTask *self)
{
UfoAnkaBackprojectTaskPrivate *priv;
self->priv = priv = UFO_ANKA_BACKPROJECT_TASK_GET_PRIVATE(self);
guint i;
GValue int_zero = G_VALUE_INIT;
GValue float_zero = G_VALUE_INIT;
g_value_init (&int_zero, G_TYPE_INT);
g_value_init (&float_zero, G_TYPE_FLOAT);
g_value_set_int (&int_zero, 0);
g_value_set_float (&float_zero, 0.0f);
self->priv->x_region = g_value_array_new (3);
self->priv->y_region = g_value_array_new (3);
self->priv->z_region = g_value_array_new (3);
self->priv->projection_offset = g_value_array_new (2);
self->priv->center = g_value_array_new (2);
for (i = 0; i < 3; i++) {
g_value_array_insert (self->priv->x_region, i, &int_zero);
g_value_array_insert (self->priv->y_region, i, &int_zero);
g_value_array_insert (self->priv->z_region, i, &int_zero);
if (i < 2) {
g_value_array_insert (self->priv->projection_offset, i, &int_zero);
g_value_array_insert (self->priv->center, i, &float_zero);
}
}
self->priv->tomo_angle_is_absolute = FALSE;
self->priv->tomo_angle = 0.0f;
self->priv->lamino_angle = 0.0f;
self->priv->count = 0;
self->priv->generated = FALSE;
}